4fb11b76-7169-4195-a16a-2cd32d4b6a60-asg-MAGScoT_c... - BioSample

4fb11b76-7169-4195-a16a-2cd32d4b6a60-asg-MAGScoT_cleanbin_000010

Identifiers: BioSample: SAMEA114511334; SRA: ERS16492680

Organism: Rhodospirillales bacterium
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; unclassified Rhodospirillales

Attributes

broad-scale environmental context	aquatic biome
collected by	GUSTAVO SANCHEZ
collection date	2021-04-26
environmental medium	adult cephalopod tissue
geographic location	Japan
host life stage	adult
host	Sepioteuthis lessoniana
host sex	female
host taxonomy ID	34570 (34570)
identified by	GUSTAVO SANCHEZ
investigation type	metagenome-assembled genome
isolation source	Cephalopod: Sepioteuthis lessoniana
tissue	WHOLE ORGANISM
project name	ASG
sample name	4fb11b76-7169-4195-a16a-2cd32d4b6a60
specimen voucher	NOT COLLECTED
16S recovered	Yes
16S recovery software	PROKKA (version 1.14.5)
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-10-18T17:23:25Z
ENA-LAST-UPDATE	2023-10-18T17:23:25Z
External Id	SAMEA114511334
GAL	University of Vienna (Cephalopod)
GAL_sample_id	NOT PROVIDED
INSDC center alias	Tree of Life Programme
INSDC center name	tree of life programme
INSDC first public	2023-10-18T17:23:25Z
INSDC last update	2023-10-18T17:23:25Z
INSDC status	public
MAG coverage software	Minimap2 (version 2.24-r1122)
Submitter Id	4fb11b76-7169-4195-a16a-2cd32d4b6a60
assembly quality	Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software	metaMDBG
binning parameters	coverage; graph; hic-mapping
binning software	MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
collecting institution	Hiroshima University
completeness score	99.57
completeness software	checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score	0.43
geographic location (latitude)	not collected
geographic location (longitude)	not collected
geographic location (region and locality)	Kaminokai \| Tosa Bay \| Kochi Prefecture
habitat	Neritic, near shore
identifier_affiliation	Hiroshima University
local environmental context	marine biome
metagenomic source	mollusc metagenome
number of standard tRNAs extracted	50
sample derived from	SAMEA114511313
scientific_name	Rhodospirillales bacterium
sequencing method	Pacbio Sequel II
specimen_id	VIEC0000008
tRNA extraction software	PROKKA (version 1.14.5)
taxonomic classification	GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker	taxonomic classification defined by topology and ANI
tolid	xcSepLess1.Rhodospirillales_3

BioProject: PRJEB69241 xcSepLess1.metagenome
Retrieve all samples from this project

Submission: EBI; 2023-10-19

Accession:: SAMEA114511334
ID:: 37880011

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4fb11b76-7169-4195-a16a-2cd32d4b6a60-asg-MAGScoT_cleanbin_000010

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