U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

111dee74-41c5-48c8-97b9-1bdf9f66f5c5-asg-MAGScoT_cleanbin_000015

Identifiers
BioSample: SAMEA114511339; SRA: ERS16492685
Organism
Rhizobiaceae bacterium
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; unclassified Rhizobiaceae
Attributes
broad-scale environmental contextaquatic biome
collected byGUSTAVO SANCHEZ
collection date2021-04-26
environmental mediumadult cephalopod tissue
geographic locationJapan
host life stageadult
hostSepioteuthis lessoniana
host sexfemale
host taxonomy ID34570 (34570)
identified byGUSTAVO SANCHEZ
investigation typemetagenome-assembled genome
isolation sourceCephalopod: Sepioteuthis lessoniana
tissueWHOLE ORGANISM
project nameASG
sample name111dee74-41c5-48c8-97b9-1bdf9f66f5c5
specimen voucherNOT COLLECTED
16S recoveredYes
16S recovery softwarePROKKA (version 1.14.5)
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-10-18T17:23:25Z
ENA-LAST-UPDATE2023-10-18T17:23:25Z
External IdSAMEA114511339
GALUniversity of Vienna (Cephalopod)
GAL_sample_idNOT PROVIDED
INSDC center aliasTree of Life Programme
INSDC center nametree of life programme
INSDC first public2023-10-18T17:23:25Z
INSDC last update2023-10-18T17:23:25Z
INSDC statuspublic
MAG coverage softwareMinimap2 (version 2.24-r1122)
Submitter Id111dee74-41c5-48c8-97b9-1bdf9f66f5c5
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly softwaremetaMDBG
binning parameterscoverage; graph; hic-mapping
binning softwareMAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
collecting institutionHiroshima University
completeness score98.8
completeness softwarecheckM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score4.78
geographic location (latitude)not collected
geographic location (longitude)not collected
geographic location (region and locality)Kaminokai | Tosa Bay | Kochi Prefecture
habitatNeritic, near shore
identifier_affiliationHiroshima University
local environmental contextmarine biome
metagenomic sourcemollusc metagenome
number of standard tRNAs extracted47
sample derived fromSAMEA114511313
scientific_nameRhizobiaceae bacterium
sequencing methodPacbio Sequel II
specimen_idVIEC0000008
tRNA extraction softwarePROKKA (version 1.14.5)
taxonomic classificationGTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity markertaxonomic classification fully defined by topology
tolidxcSepLess1.Rhizobiaceae_2
BioProject
PRJEB69241 xcSepLess1.metagenome
Retrieve all samples from this project

Submission
EBI; 2023-10-19
Accession:
SAMEA114511339
ID:
37879995

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center