This sample represents a MAG derived from the meta... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Bacteroidaceae bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; unclassified Bacteroidaceae

Attributes

broad-scale environmental context	hominid body
collection date	2001/2014
environmental medium	feces
geographic location	Cote d'Ivoire
investigation type	metagenome-assembled genome
isolation source	Feces of Pan troglodytes verus
sample name	SRR8978221_cleanbin_000001
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-11-07T00:47:19Z
ENA-LAST-UPDATE	2023-11-07T00:47:19Z
External Id	SAMEA114585098
INSDC center name	ICMB
INSDC first public	2023-11-07T00:47:19Z
INSDC last update	2023-11-07T00:47:19Z
INSDC status	public
Submitter Id	SRR8978221_cleanbin_000001
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades
binning parameters	refined binning from maxbin2 metabat2 vamb and concoct
binning software	MAGSCoT
completeness score	80
completeness software	MAGSCoT
contamination score	5.83
contamination software	MAGSCoT
geographic location (latitude)	not collected
geographic location (longitude)	not collected
local environmental context	hominid gut
metagenomic source	Pan troglodytes gut
sample derived from	SAMN17312239
scientific_name	Bacteroidaceae bacterium
taxonomic classification	gtdtbk
taxonomic identity marker	gtdtbtk marker gene sets

BioProject: PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

This sample represents a MAG derived from the metagenomic sample SAMN17312239
This sample represents a MAG derived from the metagenomic sample SAMN17312239

biosample
MAG TPA_asm: Bacillota bacterium isolate CTOTU40263, whole genome shotgun sequen...
MAG TPA_asm: Bacillota bacterium isolate CTOTU40263, whole genome shotgun sequencing project
gi|2680009594|tpg|DAIUFF000000000.1 FF010000000

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample