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This sample represents a MAG derived from the metagenomic sample SAMN17312179

Identifiers
BioSample: SAMEA114586336; SRA: ERS16685485
Organism
bacterium
cellular organisms; Bacteria; unclassified Bacteria
Attributes
broad-scale environmental contexthominid body
collection date2015/2016
environmental mediumfeces
geographic locationGabon
investigation typemetagenome-assembled genome
isolation sourceFeces of Gorilla gorilla gorilla (GAB)
sample nameH07624-L1_cleanbin_000009
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:24Z
ENA-LAST-UPDATE2023-11-07T00:47:24Z
External IdSAMEA114586336
INSDC center nameICMB
INSDC first public2023-11-07T00:47:24Z
INSDC last update2023-11-07T00:47:24Z
INSDC statuspublic
Submitter IdH07624-L1_cleanbin_000009
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score63.33
completeness softwareMAGSCoT
contamination score0.83
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceGorilla gorilla gut
sample derived fromSAMN17312179
scientific_namebacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114586336
ID:
38177975

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