6737_HOM_CTRL_s357.ctg000469c_hifiasm_circ MAG

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Result Filters

Organism: Erysipelatoclostridium sp. An173
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia; unclassified Thomasclavelia

Attributes

broad-scale environmental context	Gallus gallus
collection date	2021-09-15
environmental medium	Caecal contents
geographic location	United Kingdom
isolation source	Caecal contents from a chicken (Gallus gallus)
project name	Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
sample name	6737_HOM_CTRL_s357.ctg000469c_hifiasm_circ MAG
ENA first public	2024-05-09
ENA-CHECKLIST	ERC000011
External Id	SAMEA115146109
INSDC center name	The Roslin Institute (University of Edinburgh)
INSDC last update	2024-01-26T11:57:47Z
INSDC status	public
Submitter Id	6737_HOM_CTRL_s357.ctg000469c_hifiasm_circ MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Hifiasm-meta
binning parameters	Not applicable
binning software	Not applicable
completeness score	100
completeness software	CheckM2
contamination score	1.92
geographic location (latitude)	55.86
geographic location (longitude)	-3.2
local environmental context	Gastrointestinal tract microbiota
metagenomic source	chicken gut metagenome
sample derived from	ERS16138921
scientific_name	Erysipelatoclostridium sp. An173
taxonomic identity marker	GTDB-Tk

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138921

BioProject: PRJEB64517 Metagenomic characterisation of the caecal microbiota of XCR1 wild-type and knockout chickens, with and without infectious bronchitis virus vaccination
Retrieve all samples from this project

6737_HOM_CTRL_s357.ctg000469c_hifiasm_circ MAG
6737_HOM_CTRL_s357.ctg000469c_hifiasm_circ MAG

biosample
metabat2_coassembly_bwa.432 MAG
metabat2_coassembly_bwa.432 MAG

biosample
MAG: Clostridia bacterium isolate metabat2_XCR1_HET_7839_bwa.22 MAG, whole genom...
MAG: Clostridia bacterium isolate metabat2_XCR1_HET_7839_bwa.22 MAG, whole genome shotgun sequencing project
gi|2728610970|emb|CAWVKB000000000.1 KB010000000

Nucleotide
MAG: Candidatus Eubacterium faecigallinarum isolate metabat2_XCR1_HET_7867_bwa.7...
MAG: Candidatus Eubacterium faecigallinarum isolate metabat2_XCR1_HET_7867_bwa.7 MAG, whole genome shotgun sequencing project
gi|2728605600|emb|CAWVMC000000000.1 MC010000000

Nucleotide
MAG: Candidatus Pullilachnospira stercoravium isolate metabat2_coassembly_bwa.64...
MAG: Candidatus Pullilachnospira stercoravium isolate metabat2_coassembly_bwa.640 MAG, whole genome shotgun sequencing project
gi|2728621674|emb|CAWVGQ000000000.1 GQ010000000

Nucleotide

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