6755_HET_CTRL_s226.ctg000285l_hifiasm_large MAG

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Result Filters

Organism: uncultured Clostridia bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; environmental samples

Attributes

broad-scale environmental context	Gallus gallus
collection date	2021-09-14
environmental medium	Caecal contents
geographic location	United Kingdom
isolation source	Caecal contents from a chicken (Gallus gallus)
project name	Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
sample name	6755_HET_CTRL_s226.ctg000285l_hifiasm_large MAG
ENA first public	2024-05-09
ENA-CHECKLIST	ERC000011
External Id	SAMEA115146123
INSDC center name	The Roslin Institute (University of Edinburgh)
INSDC last update	2024-01-26T11:57:47Z
INSDC status	public
Submitter Id	6755_HET_CTRL_s226.ctg000285l_hifiasm_large MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Hifiasm-meta
binning parameters	Not applicable
binning software	Not applicable
completeness score	97.32
completeness software	CheckM2
contamination score	3.36
geographic location (latitude)	55.86
geographic location (longitude)	-3.2
local environmental context	Gastrointestinal tract microbiota
metagenomic source	chicken gut metagenome
sample derived from	ERS16138927
scientific_name	uncultured Clostridia bacterium
taxonomic identity marker	GTDB-Tk

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138927

BioProject: PRJEB64517 Metagenomic characterisation of the caecal microbiota of XCR1 wild-type and knockout chickens, with and without infectious bronchitis virus vaccination
Retrieve all samples from this project

6755_HET_CTRL_s226.ctg000285l_hifiasm_large MAG
6755_HET_CTRL_s226.ctg000285l_hifiasm_large MAG

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metabat2_coassembly_bwa.432 MAG
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biosample
MAG: Clostridia bacterium isolate metabat2_XCR1_HET_7839_bwa.22 MAG, whole genom...
MAG: Clostridia bacterium isolate metabat2_XCR1_HET_7839_bwa.22 MAG, whole genome shotgun sequencing project
gi|2728610970|emb|CAWVKB000000000.1 KB010000000

Nucleotide

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