Metagenome-assembled genome: ERR3589581_concoct_172

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Result Filters

Organism: uncultured Reinekea sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Oceanospirillales; Saccharospirillaceae; Reinekea; environmental samples

Attributes

broad-scale environmental context	water
collection date	not provided
environmental medium	tara
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Analysis of the genes and genomes present in Tara Oceans Polar Circle prokaryote size fractions through shotgun DNA sequencing. Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
sample name	ERR3589581_concoct_172
ENA first public	2024-02-06
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
INSDC status	public
Submitter Id	ERR3589581_concoct_172
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.14.1
binning parameters	default
binning software	MGnify-genomes-generation-pipeline_v1.0.0
broker name	EBI-EMG
completeness score	50.3
completeness software	CheckM2_v1.0.1
contamination score	2.01
geographic location (latitude)	71.0704
geographic location (longitude)	174.9916
local environmental context	marine
metagenomic source	marine metagenome
sample derived from	SAMEA4397798
scientific_name	uncultured Reinekea sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR3589581 of study ERP010880.

Metagenome-assembled genome: ERR3589581_concoct_172
Metagenome-assembled genome: ERR3589581_concoct_172

biosample
MAG TPA_asm: uncultured Gammaproteobacteria bacterium isolate ERR3589578_binner1...
MAG TPA_asm: uncultured Gammaproteobacteria bacterium isolate ERR3589578_binner13_84, whole genome shotgun sequencing project
gi|2672360189|tpe|CAWVZP000000000.1 ZP010000000

Nucleotide
MAG: uncultured Candidatus Saccharibacteria bacterium isolate ERR5385025_bin.12_...
MAG: uncultured Candidatus Saccharibacteria bacterium isolate ERR5385025_bin.12_metawrap_v1.3.0_MAG, whole genome shotgun sequencing project
gi|2300749888|emb|CAMLKC000000000.1 KC010000000

Nucleotide
MAG: Pedobacter kyonggii isolate ERR5385026_bin.3_metawrap_v1.3.0_MAG, whole gen...
MAG: Pedobacter kyonggii isolate ERR5385026_bin.3_metawrap_v1.3.0_MAG, whole genome shotgun sequencing project
gi|2300750576|emb|CAMLKL000000000.1 KL010000000

Nucleotide
MAG: uncultured bacterium isolate ERR5385029_bin.10_metawrap_v1.3.0_MAG, whole g...
MAG: uncultured bacterium isolate ERR5385029_bin.10_metawrap_v1.3.0_MAG, whole genome shotgun sequencing project
gi|2300718699|emb|CAMLFJ000000000.1 FJ010000000

Nucleotide

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