Metagenome-assembled genome: ERR3589583_binner123_3

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Result Filters

Organism: uncultured Verrucomicrobiales bacterium
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; environmental samples

Attributes

broad-scale environmental context	water
collection date	not provided
environmental medium	tara
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Analysis of the genes and genomes present in Tara Oceans Polar Circle prokaryote size fractions through shotgun DNA sequencing. Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
sample name	ERR3589583_binner123_3
ENA first public	2024-02-06
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
INSDC status	public
Submitter Id	ERR3589583_binner123_3
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.14.1
binning parameters	default
binning software	MGnify-genomes-generation-pipeline_v1.0.0
broker name	EBI-EMG
completeness score	96.95
completeness software	CheckM2_v1.0.1
contamination score	0.28
geographic location (latitude)	54.5451
geographic location (longitude)	-16.7943
local environmental context	marine
metagenomic source	marine metagenome
sample derived from	SAMEA4396496
scientific_name	uncultured Verrucomicrobiales bacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR3589583 of study ERP010880.

Metagenome-assembled genome: ERR3589583_binner123_3
Metagenome-assembled genome: ERR3589583_binner123_3

biosample
MAG: Asticcacaulis taihuensis isolate ERR5385031_bin.6_metawrap_v1.3.0_MAG, whol...
MAG: Asticcacaulis taihuensis isolate ERR5385031_bin.6_metawrap_v1.3.0_MAG, whole genome shotgun sequencing project
gi|2300730973|emb|CAMLHA000000000.1 HA010000000

Nucleotide
MAG TPA_asm: uncultured bacterium isolate ERR3589592_concoct_115, whole genome s...
MAG TPA_asm: uncultured bacterium isolate ERR3589592_concoct_115, whole genome shotgun sequencing project
gi|2672287766|tpe|CAWVUI000000000.1 UI010000000

Nucleotide
MAG TPA_asm: uncultured Alphaproteobacteria bacterium isolate ERR3589570_concoct...
MAG TPA_asm: uncultured Alphaproteobacteria bacterium isolate ERR3589570_concoct_61, whole genome shotgun sequencing project
gi|2672287046|tpe|CAWVTQ000000000.1 TQ010000000

Nucleotide
MAG TPA_asm: uncultured Formosa sp. isolate ERR3589586_binner13_28, whole genome...
MAG TPA_asm: uncultured Formosa sp. isolate ERR3589586_binner13_28, whole genome shotgun sequencing project
gi|2672328126|tpe|CAWVRW000000000.1 RW010000000

Nucleotide

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