MAG_001_R8

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Result Filters

Organism: Pseudoxanthomonas winnipegensis
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Pseudoxanthomonas

Attributes

broad-scale environmental context	mangrove biome soil
collection date	2021-06
environmental medium	estuarine mud
geographic location	Colombia
isolation source	mangrove soil microbiome under the presence of seawater collected from Baru Island (Colombia)
project name	Hunting polymers-transforming microbes from mangrove soils
sample name	MAG_001_R8
ENA first public	2024-03-30
ENA-CHECKLIST	ERC000047
INSDC center name	Computational Biology and Microbial Ecology
INSDC status	public
Submitter Id	MAG_001_R8
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; 1.2.9; default parameters
binning parameters	default parameters
binning software	MaxBin (biotools:maxbin), Concoct, MetaBAT2, DAS Tool
completeness score	99.66
completeness software	CheckM
contamination score	0.43
geographic location (latitude)	10,26366
geographic location (longitude)	-75,59169
local environmental context	hotel
metagenomic source	mangrove metagenome
sample derived from	ERS18220289
scientific_name	Pseudoxanthomonas winnipegensis
taxonomic identity marker	multi-marker approach

Description: This sample represents a MAG derived from the metagenomic sample ERR12658427

MAG_001_R8
MAG_001_R8

biosample
Homo sapiens mRNA; cDNA DKFZp779E1157 (from clone DKFZp779E1157)
Homo sapiens mRNA; cDNA DKFZp779E1157 (from clone DKFZp779E1157)
gi|34368349|emb|BX649177.1|

Nucleotide

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