MAG_005_R8

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Result Filters

Organism: Rhodopseudomonas pseudopalustris
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Nitrobacteraceae; Rhodopseudomonas

Attributes

broad-scale environmental context	mangrove biome soil
collection date	2021-06
environmental medium	estuarine mud
geographic location	Colombia
isolation source	mangrove soil microbiome under the presence of seawater collected from Baru Island (Colombia)
project name	Hunting polymers-transforming microbes from mangrove soils
sample name	MAG_005_R8
ENA first public	2024-03-30
ENA-CHECKLIST	ERC000047
INSDC center name	Computational Biology and Microbial Ecology
INSDC status	public
Submitter Id	MAG_005_R8
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; 1.2.9; default parameters
binning parameters	default parameters
binning software	MaxBin (biotools:maxbin), Concoct, MetaBAT2, DAS Tool
completeness score	99.83
completeness software	CheckM
contamination score	1.79
geographic location (latitude)	10,26366
geographic location (longitude)	-75,59169
local environmental context	hotel
metagenomic source	mangrove metagenome
sample derived from	ERS18220289
scientific_name	Rhodopseudomonas pseudopalustris
taxonomic identity marker	multi-marker approach

Description: This sample represents a MAG derived from the metagenomic sample ERR12658427

MAG_005_R8
MAG_005_R8

biosample
Homo sapiens cDNA FLJ34073 fis, clone FCBBF3002658
Homo sapiens cDNA FLJ34073 fis, clone FCBBF3002658
gi|21749751|dbj|AK091392.1|

Nucleotide
Homo sapiens chromosome 10 open reading frame 18, mRNA (cDNA clone IMAGE:3354582...
Homo sapiens chromosome 10 open reading frame 18, mRNA (cDNA clone IMAGE:3354582), partial cds
gi|12804668|gb|BC001759.1|

Nucleotide

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