Metagenome-assembled genome: ERR594411_binner123_R... - BioSample

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Result Filters

Identifiers: BioSample: SAMEA115325381; Sample name: ERR594411_binner123_Refined_11; SRA: ERS18322567

Organism: uncultured Idiomarina sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina; environmental samples

Attributes

broad-scale environmental context	water
collection date	not provided
environmental medium	tara
investigation type	metagenome-assembled genome
project name	Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.
geographic location	not provided
isolation source	marine metagenome
assembly software	metaspades_v3.14.1
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured Idiomarina sp.
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived from	SAMEA2621271
geographic location (longitude)	-43.2899 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	100 %
contamination score	0.14 %
geographic location (latitude)	-30.1367 DD
scientific_name	uncultured Idiomarina sp.
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina HiSeq 2000
completeness software	CheckM2_v1.0.1

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594411 of study ERP003708.

Metagenome-assembled genome: ERR594411_binner123_Refined_11
Metagenome-assembled genome: ERR594411_binner123_Refined_11

biosample
MAG TPA_asm: uncultured Marinimicrobium sp. isolate ERR594369_binner123_Refined_...
MAG TPA_asm: uncultured Marinimicrobium sp. isolate ERR594369_binner123_Refined_18, whole genome shotgun sequencing project
gi|2696929087|tpe|CAXATV000000000.1 TV010000000

Nucleotide
MAG TPA_asm: uncultured Stutzerimonas sp. isolate ERR599372_binner13_Refined_17,...
MAG TPA_asm: uncultured Stutzerimonas sp. isolate ERR599372_binner13_Refined_17, whole genome shotgun sequencing project
gi|2696958960|tpe|CAXAWW000000000.1 WW010000000

Nucleotide
MAG TPA_asm: uncultured Sulfitobacter sp. isolate ERR599351_binner13_Refined_24,...
MAG TPA_asm: uncultured Sulfitobacter sp. isolate ERR599351_binner13_Refined_24, whole genome shotgun sequencing project
gi|2696869846|tpe|CAXAZU000000000.1 ZU010000000

Nucleotide
MAG TPA_asm: uncultured Halieaceae bacterium isolate ERR594407_metabat2_16, whol...
MAG TPA_asm: uncultured Halieaceae bacterium isolate ERR594407_metabat2_16, whole genome shotgun sequencing project
gi|2696864191|tpe|CAXBBA000000000.1 BA010000000

Nucleotide

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