Metagenome-assembled genome: ERR594407_binner12_Re... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Identifiers: BioSample: SAMEA115325466; Sample name: ERR594407_binner12_Refined_32; SRA: ERS18322652

Organism: uncultured Cobetia sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Cobetia; environmental samples

Attributes

broad-scale environmental context	water
collection date	not provided
environmental medium	tara
investigation type	metagenome-assembled genome
project name	Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.
geographic location	not provided
isolation source	marine metagenome
assembly software	metaspades_v3.14.1
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured Cobetia sp.
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived from	SAMEA2621107
geographic location (longitude)	-3.1641 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	99.02 %
contamination score	0.03 %
geographic location (latitude)	-20.4075 DD
scientific_name	uncultured Cobetia sp.
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina HiSeq 2000
completeness software	CheckM2_v1.0.1

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594407 of study ERP003708.

Metagenome-assembled genome: ERR594407_binner12_Refined_32
Metagenome-assembled genome: ERR594407_binner12_Refined_32

biosample
Metagenome-assembled genome: ERR594410_metabat2_15
Metagenome-assembled genome: ERR594410_metabat2_15

biosample
Metagenome-assembled genome: ERR594396_concoct_71
Metagenome-assembled genome: ERR594396_concoct_71

biosample
MAG TPA_asm: Pseudohongiella nitratireducens isolate ERR594358_binner123_Refined...
MAG TPA_asm: Pseudohongiella nitratireducens isolate ERR594358_binner123_Refined_17, whole genome shotgun sequencing project
gi|2696890301|tpe|CAXATY000000000.1 TY010000000

Nucleotide
MAG TPA_asm: uncultured Candidatus Saccharibacteria bacterium isolate ERR599371_...
MAG TPA_asm: uncultured Candidatus Saccharibacteria bacterium isolate ERR599371_binner12_Refined_30, whole genome shotgun sequencing project
gi|2696592115|tpe|CAXAUL000000000.1 UL010000000

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample