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Metagenome-assembled genome: ERR3525230_binner12_Refined_52

Identifiers
BioSample: SAMEA115331955; Sample name: ERR3525230_binner12_Refined_52; SRA: ERS18329141
Organism
uncultured Roseibacillus sp.
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; Verrucomicrobiaceae; Roseibacillus; environmental samples
Attributes
broad-scale environmental contextwater
collection date2012-05-10
environmental mediumatlantic
investigation typemetagenome-assembled genome
project name22 environmental metagenomic surface water (20 m depth) samples from two transects to the Southern and Atlantic Ocean (RV Polarstern ANT-XXVIII/4 and ANT-XXVIII/5 in 2012). Samples were filtered on 0.2µm polycarbonate filters and stored at -80°C until extraction and sequencing unsing an Illumina HiSeq 25002500.
geographic locationAtlantic Ocean
isolation sourcemarine metagenome
assembly softwaremetaspades_v3.15.3
binning softwareMGnify-genomes-generation-pipeline_v1.0.0
organismuncultured Roseibacillus sp.
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived fromSAMEA5958360
geographic location (longitude)-10.93500000 DD
taxonomic identity markermulti-marker approach
binning parametersdefault
completeness score64.71 %
contamination score0.26 %
geographic location (latitude)43.04230000 DD
scientific_nameuncultured Roseibacillus sp.
local environmental contextocean
metagenomic sourcemarine metagenome
sequencing methodIllumina HiSeq 2500
completeness softwareCheckM2_v1.0.1
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR3525230 of study ERP117360.

BioProject
PRJEB71379
Retrieve all samples from this project

Submission
EBI; 2024-02-23
Accession:
SAMEA115331955
ID:
40077177

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