Metagenome-assembled genome: ERR3525233_binner123_... - BioSample

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Identifiers: BioSample: SAMEA115331959; Sample name: ERR3525233_binner123_Refined_56; SRA: ERS18329145

Organism: uncultured Verrucomicrobiales bacterium
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; environmental samples

Attributes

broad-scale environmental context	water
collection date	2012-05-03
environmental medium	atlantic
investigation type	metagenome-assembled genome
project name	22 environmental metagenomic surface water (20 m depth) samples from two transects to the Southern and Atlantic Ocean (RV Polarstern ANT-XXVIII/4 and ANT-XXVIII/5 in 2012). Samples were filtered on 0.2µm polycarbonate filters and stored at -80°C until extraction and sequencing unsing an Illumina HiSeq 25002500.
geographic location	Atlantic Ocean
isolation source	marine metagenome
assembly software	metaspades_v3.15.3
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured Verrucomicrobiales bacterium
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived from	SAMEA5958363
geographic location (longitude)	-21.28333333 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	68.73 %
contamination score	0.24 %
geographic location (latitude)	20.70470000 DD
scientific_name	uncultured Verrucomicrobiales bacterium
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina HiSeq 2500
completeness software	CheckM2_v1.0.1

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR3525233 of study ERP117360.

Metagenome-assembled genome: ERR3525233_binner123_Refined_56
Metagenome-assembled genome: ERR3525233_binner123_Refined_56

biosample
MAG TPA_asm: uncultured Candidatus Poseidoniales archaeon isolate ERR3525238_bin...
MAG TPA_asm: uncultured Candidatus Poseidoniales archaeon isolate ERR3525238_binner12_Refined_7, whole genome shotgun sequencing project
gi|2688215390|tpe|CAXAJK000000000.1 JK010000000

Nucleotide
MAG TPA_asm: uncultured Flavobacteriales bacterium isolate ERR3525231_concoct_11...
MAG TPA_asm: uncultured Flavobacteriales bacterium isolate ERR3525231_concoct_119, whole genome shotgun sequencing project
gi|2688216487|tpe|CAXAFI000000000.1 FI010000000

Nucleotide
MULTISPECIES: DUF4942 domain-containing protein [Enterobacterales]
MULTISPECIES: DUF4942 domain-containing protein [Enterobacterales]
gi|504872896|ref|WP_015059998.1|

Protein

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