Metagenome-assembled genome: ERR3525233_concoct_19

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Result Filters

Identifiers: BioSample: SAMEA115331961; Sample name: ERR3525233_concoct_19; SRA: ERS18329147

Organism: uncultured Flavobacteriales bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; environmental samples

Attributes

broad-scale environmental context	water
collection date	2012-05-03
environmental medium	atlantic
investigation type	metagenome-assembled genome
project name	22 environmental metagenomic surface water (20 m depth) samples from two transects to the Southern and Atlantic Ocean (RV Polarstern ANT-XXVIII/4 and ANT-XXVIII/5 in 2012). Samples were filtered on 0.2µm polycarbonate filters and stored at -80°C until extraction and sequencing unsing an Illumina HiSeq 25002500.
geographic location	Atlantic Ocean
isolation source	marine metagenome
assembly software	metaspades_v3.15.3
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured Flavobacteriales bacterium
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived from	SAMEA5958363
geographic location (longitude)	-21.28333333 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	85.4 %
contamination score	1.69 %
geographic location (latitude)	20.70470000 DD
scientific_name	uncultured Flavobacteriales bacterium
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina HiSeq 2500
completeness software	CheckM2_v1.0.1

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR3525233 of study ERP117360.

Metagenome-assembled genome: ERR3525233_concoct_19
Metagenome-assembled genome: ERR3525233_concoct_19

biosample
Metagenome-assembled genome: ERR3525246_concoct_52
Metagenome-assembled genome: ERR3525246_concoct_52

biosample
Metagenome-assembled genome: ERR3525235_binner13_Refined_10
Metagenome-assembled genome: ERR3525235_binner13_Refined_10

biosample
MAG TPA_asm: uncultured euryarchaeote isolate ERR3525244_concoct_132, whole geno...
MAG TPA_asm: uncultured euryarchaeote isolate ERR3525244_concoct_132, whole genome shotgun sequencing project
gi|2688223098|tpe|CAXAHZ000000000.1 HZ010000000

Nucleotide
MAG TPA_asm: uncultured Flavobacteriaceae bacterium isolate ERR3525249_binner13_...
MAG TPA_asm: uncultured Flavobacteriaceae bacterium isolate ERR3525249_binner13_Refined_1, whole genome shotgun sequencing project
gi|2688211595|tpe|CAXAJE000000000.1 JE010000000

Nucleotide

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