Metagenome-assembled genome: ERR3525244_binner13_R... - BioSample

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Result Filters

Identifiers: BioSample: SAMEA115331966; Sample name: ERR3525244_binner13_Refined_9; SRA: ERS18329152

Organism: uncultured Candidatus Puniceispirillum sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Candidatus Puniceispirillales; Candidatus Puniceispirillaceae; Candidatus Puniceispirillum; environmental samples

Attributes

broad-scale environmental context	water
collection date	2012-04-12
environmental medium	atlantic
investigation type	metagenome-assembled genome
project name	22 environmental metagenomic surface water (20 m depth) samples from two transects to the Southern and Atlantic Ocean (RV Polarstern ANT-XXVIII/4 and ANT-XXVIII/5 in 2012). Samples were filtered on 0.2µm polycarbonate filters and stored at -80°C until extraction and sequencing unsing an Illumina HiSeq 25002500.
geographic location	Atlantic Ocean
isolation source	marine metagenome
assembly software	metaspades_v3.15.3
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured Candidatus Puniceispirillum sp.
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived from	SAMEA5958375
geographic location (longitude)	-61.92270000 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	87.0 %
contamination score	0.98 %
geographic location (latitude)	-47.94120000 DD
scientific_name	uncultured Candidatus Puniceispirillum sp.
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina HiSeq 2500
completeness software	CheckM2_v1.0.1

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR3525244 of study ERP117360.

Metagenome-assembled genome: ERR3525244_binner13_Refined_9
Metagenome-assembled genome: ERR3525244_binner13_Refined_9

biosample
Metagenome-assembled genome: ERR3525245_concoct_174
Metagenome-assembled genome: ERR3525245_concoct_174

biosample
Metagenome-assembled genome: ERR3525233_concoct_50
Metagenome-assembled genome: ERR3525233_concoct_50

biosample
MAG TPA_asm: uncultured Opitutia bacterium isolate ERR3525237_concoct_80, whole ...
MAG TPA_asm: uncultured Opitutia bacterium isolate ERR3525237_concoct_80, whole genome shotgun sequencing project
gi|2688230458|tpe|CAXAJO000000000.1 JO010000000

Nucleotide
MAG TPA_asm: uncultured Phycisphaera sp. isolate ERR3525233_concoct_50, whole ge...
MAG TPA_asm: uncultured Phycisphaera sp. isolate ERR3525233_concoct_50, whole genome shotgun sequencing project
gi|2688211268|tpe|CAXAIC000000000.1 IC010000000

Nucleotide

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