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Metagenome-assembled genome: SRR3724365_binner123_Refined_13

Identifiers
BioSample: SAMEA115380457; SRA: ERS18399823
Organism
uncultured Methylococcales bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Methylococcales; environmental samples
Attributes
broad-scale environmental contextwater
collection date2009-08-11
environmental mediumfjord
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameSaanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.
sample nameSRR3724365_binner123_Refined_13
ENA first public2024-03-07
ENA-CHECKLISTERC000047
INSDC center nameEMG
INSDC statuspublic
Submitter IdSRR3724365_binner123_Refined_13
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.14.1
binning parametersdefault
binning softwareMGnify-genomes-generation-pipeline_v1.0.0
broker nameEBI-EMG
completeness score100
completeness softwareCheckM2_v1.0.1
contamination score0.0
geographic location (latitude)48.56633460
geographic location (longitude)-123.51932569
local environmental contextmarine
metagenomic sourcemarine metagenome
sample derived fromSAMN05224406
scientific_nameuncultured Methylococcales bacterium
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724365 of study SRP043213.

BioProject
PRJEB49035
Retrieve all samples from this project

Submission
EBI; 2024-06-04
Accession:
SAMEA115380457
ID:
41665698

BioProject Nucleotide

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