Metagenome-assembled genome: ERR599072_binner12_Re... - BioSample

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Result Filters

Organism: uncultured bacterium
cellular organisms; Bacteria; environmental samples

Attributes

broad-scale environmental context	water
collection date	not provided
environmental medium	tara
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
sample name	ERR599072_binner12_Refined_41
ENA first public	2024-03-17
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
INSDC status	public
Submitter Id	ERR599072_binner12_Refined_41
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades_v3.11.1
binning parameters	default
binning software	MGnify-genomes-generation-pipeline_v1.0.0
broker name	EBI-EMG
completeness score	58.84
completeness software	CheckM2_v1.0.1
contamination score	3.01
geographic location (latitude)	-23.22320000
geographic location (longitude)	-129.59860000
local environmental context	ocean
metagenomic source	marine metagenome
sample derived from	SAMEA2622568
scientific_name	uncultured bacterium
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599072 of study ERP001736.

BioProject: PRJEB22493 APY metagenomic assembly
Retrieve all samples from this project

Metagenome-assembled genome: ERR599072_binner12_Refined_41
Metagenome-assembled genome: ERR599072_binner12_Refined_41

biosample
Metagenome-assembled genome: ERR598947_concoct_21
Metagenome-assembled genome: ERR598947_concoct_21

biosample
MAG TPA_asm: uncultured Flavobacteriales bacterium isolate ERR599006_binner12_Re...
MAG TPA_asm: uncultured Flavobacteriales bacterium isolate ERR599006_binner12_Refined_33, whole genome shotgun sequencing project
gi|2700201765|tpe|CAXFBP000000000.1 BP010000000

Nucleotide
MAG TPA_asm: uncultured Formosa sp. isolate ERR599035_binner12_Refined_42, whole...
MAG TPA_asm: uncultured Formosa sp. isolate ERR599035_binner12_Refined_42, whole genome shotgun sequencing project
gi|2700112530|tpe|CAXERZ000000000.1 RZ010000000

Nucleotide
MAG TPA_asm: uncultured Oceanospirillaceae bacterium isolate ERR599028_binner12_...
MAG TPA_asm: uncultured Oceanospirillaceae bacterium isolate ERR599028_binner12_Refined_48, whole genome shotgun sequencing project
gi|2700129992|tpe|CAXFEW000000000.1 EW010000000

Nucleotide

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