07C-BC-St07_bin.5.orig

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Amylibacter sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Amylibacter; environmental samples

Attributes

broad-scale environmental context	polar environment [ENVO:01001703]
collection date	2016-09-04
environmental medium	marine sediment [ENVO:03000033]
geographic location	Arctic Ocean
isolation source	marine sediment
project name	Marine sediment microbiomes in East Siberian Sea
sample name	07C-BC-St07_bin.5.orig
ENA first public	2024-07-04
ENA-CHECKLIST	ERC000047
INSDC center name	KOPRI
INSDC status	public
Submitter Id	07C-BC-St07_bin.5.orig
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT (v1.2.9)
binning parameters	completeness > 70%, contamination > 10%
binning software	MaxBin2 (v2.2.6), MetaBAT2 (v2.12.1), CONCOCT (v1.0.0)
completeness score	72.67
completeness software	CheckM (v1.2.2)
contamination score	7.73
geographic location (latitude)	73.8145
geographic location (longitude)	169.1941
local environmental context	seafloor [ENVO:00000482]
metagenomic source	marine sediment metagenome
sample derived from	ERS20273660
scientific_name	uncultured Amylibacter sp.
taxonomic identity marker	multi marker approach