Metagenome-assembled genome: ERR3414577_bin.22_met... - BioSample

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Metagenome-assembled genome: ERR3414577_bin.22_metaWRAP_v1.1_MAG

Identifiers: BioSample: SAMEA13008858; SRA: ERS10607757

Organism: uncultured Clostridium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Chicken digestive system
local-scale environmental context	Digestive tube
environmental medium	Cecum
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	chicken gut metagenome
project name	We sequenced DNA from cecal contents samples taken from 24 chickens belonging to either a fast or slower growing breed consuming either a vegetable-only diet or a diet containing fish meal. We utilised 1.6T of Illumina data to construct 469 draft metagenome-assembled bacterial genomes, including 460 novel strains, 283 novel species and 42 novel genera.
sample name	ERR3414577_bin.22_metaWRAP_v1.1_MAG
ENA first public	2022-02-16
ENA last update	2022-02-16
ENA-CHECKLIST	ERC000047
External Id	SAMEA13008858
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-02-16T20:45:18Z
INSDC last update	2022-02-16T20:45:18Z
INSDC status	public
Submitter Id	ERR3414577_bin.22_metaWRAP_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	IDBA-UD
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	77.22
completeness software	CheckM
contamination score	1.56
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	chicken gut metagenome
sample derived from	SAMEA5754826
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414577 of study ERP116122.