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Metagenome-assembled genome: ERR3414581_bin.123_metaWRAP_v1.1_MAG

Identifiers
BioSample: SAMEA13009029; SRA: ERS10607928
Organism
uncultured Clostridia bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; environmental samples
Attributes
collection datenot provided
broad-scale environmental contextChicken digestive system
local-scale environmental contextDigestive tube
environmental mediumCecum
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcechicken gut metagenome
project nameWe sequenced DNA from cecal contents samples taken from 24 chickens belonging to either a fast or slower growing breed consuming either a vegetable-only diet or a diet containing fish meal. We utilised 1.6T of Illumina data to construct 469 draft metagenome-assembled bacterial genomes, including 460 novel strains, 283 novel species and 42 novel genera.
sample nameERR3414581_bin.123_metaWRAP_v1.1_MAG
ENA first public2022-02-16
ENA last update2022-02-16
ENA-CHECKLISTERC000047
External IdSAMEA13009029
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-02-16T20:45:17Z
INSDC last update2022-02-16T20:45:17Z
INSDC statuspublic
Submitter IdERR3414581_bin.123_metaWRAP_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareIDBA-UD
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score93.25
completeness softwareCheckM
contamination score0.0
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcechicken gut metagenome
sample derived fromSAMEA5754830
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414581 of study ERP116122.

BioProject
PRJEB50262
Retrieve all samples from this project

Submission
EBI; 2022-02-17
Accession:
SAMEA13009029
ID:
26018811

BioProject Nucleotide

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