Metagenome-assembled genome: SRR2107179_bin.41_CON... - BioSample

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Result Filters

Organism: uncultured Chitinophagaceae bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Chitinophagia; Chitinophagales; Chitinophagaceae; environmental samples

Attributes

collection date	2008-09-05
broad-scale environmental context	Engineered
local-scale environmental context	Wastewater
environmental medium	Wastewater
geographic location	Argentina
investigation type	metagenome-assembled genome
isolation source	wastewater metagenome
project name	We performed massive shotgun-sequencing on activated sludge samples from four full-scale industrial and two municipal wastewater treatment plants, each sampled at two different times and with two technical replicates, to determine the functional potential of sludge metagenomes.
sample name	SRR2107179_bin.41_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14036561
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:08Z
INSDC last update	2023-01-03T00:32:08Z
INSDC status	public
Submitter Id	SRR2107179_bin.41_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	9.14
geographic location (latitude)	-34.84
geographic location (longitude)	-58.2
metagenomic source	wastewater metagenome
sample derived from	SAMN03794739
scientific_name	uncultured Chitinophagaceae bacterium
sequencing method	Illumina HiSeq 1500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2107179 of study SRP060024.

BioProject: PRJEB51080 Large-scale analysis of novel cellular microbes from the wastewater biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR2107179_bin.41_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR2107179_bin.41_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured bacterium isolate SRR2107179_bin.10_CONCOCT_v1.1_MAG, wh...
MAG TPA_asm: uncultured bacterium isolate SRR2107179_bin.10_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425518405|tpe|CALLZJ000000000.1 ZJ010000000

Nucleotide
MAG TPA_asm: uncultured Bacteroidetes bacterium isolate SRR2107211_bin.13_CONCOC...
MAG TPA_asm: uncultured Bacteroidetes bacterium isolate SRR2107211_bin.13_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2426236984|tpe|CALMYS000000000.1 YS010000000

Nucleotide
MAG TPA_asm: Tepidiphilus thermophilus isolate ERR3519521_bin.95_CONCOCT_v1.1_MA...
MAG TPA_asm: Tepidiphilus thermophilus isolate ERR3519521_bin.95_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423476330|tpe|CALMFV000000000.1 FV010000000

Nucleotide
MAG TPA_asm: uncultured bacterium isolate ERR2113683_bin.0_CONCOCT_v1.1_MAG, who...
MAG TPA_asm: uncultured bacterium isolate ERR2113683_bin.0_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424097962|tpe|CALLYX000000000.1 YX010000000

Nucleotide

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