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Metagenome-assembled genome: SRR2107215_bin.54_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14036646; SRA: ERS11639928
Organism
uncultured Candidatus Saccharibacteria bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Saccharibacteria; environmental samples
Attributes
collection date2012-10-10
broad-scale environmental contextEngineered
local-scale environmental contextWastewater
environmental mediumWastewater
geographic locationArgentina
investigation typemetagenome-assembled genome
isolation sourcewastewater metagenome
project nameWe performed massive shotgun-sequencing on activated sludge samples from four full-scale industrial and two municipal wastewater treatment plants, each sampled at two different times and with two technical replicates, to determine the functional potential of sludge metagenomes.
sample nameSRR2107215_bin.54_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14036646
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:07Z
INSDC last update2023-01-03T00:32:07Z
INSDC statuspublic
Submitter IdSRR2107215_bin.54_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.12.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score64.04
completeness softwareCheckM
contamination score0.93
geographic location (latitude)-34.47
geographic location (longitude)-58.59
metagenomic sourcewastewater metagenome
sample derived fromSAMN03794764
scientific_nameuncultured Candidatus Saccharibacteria bacterium
sequencing methodIllumina HiSeq 1500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2107215 of study SRP060024.

BioProject
PRJEB51080 Large-scale analysis of novel cellular microbes from the wastewater biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14036646
ID:
32555959

BioProject Nucleotide

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