Metagenome-assembled genome: SRR5007357_bin.106_CO... - BioSample

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Result Filters

Organism: uncultured Petrotoga sp.
cellular organisms; Bacteria; Thermotogota; Thermotogae; Petrotogales; Petrotogaceae; Petrotoga; environmental samples

Attributes

collection date	2015-02-05
broad-scale environmental context	Engineered
local-scale environmental context	Wastewater
environmental medium	Wastewater
geographic location	Japan
investigation type	metagenome-assembled genome
isolation source	wastewater metagenome
project name	Metagenomics of anaerobic wastewater microbial communities to study anthropogenic carbon cycling
sample name	SRR5007357_bin.106_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14036697
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:02Z
INSDC last update	2023-01-03T00:32:02Z
INSDC status	public
Submitter Id	SRR5007357_bin.106_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	96.55
completeness software	CheckM
contamination score	6.55
geographic location (latitude)	37.43
geographic location (longitude)	138.83
metagenomic source	wastewater metagenome
sample derived from	SAMN05720220
scientific_name	uncultured Petrotoga sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5007357 of study SRP093105.

BioProject: PRJEB51080 Large-scale analysis of novel cellular microbes from the wastewater biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR5007357_bin.106_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR5007357_bin.106_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Candidatus Saccharibacteria bacterium isolate SRR6158309...
MAG TPA_asm: uncultured Candidatus Saccharibacteria bacterium isolate SRR6158309_bin.25_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425321825|tpe|CALMSK000000000.1 SK010000000

Nucleotide
Metagenome-assembled genome: ERR3519528_bin.13_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR3519528_bin.13_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Burkholderiales bacterium isolate SRR5676450_bin.40_CONC...
MAG TPA_asm: uncultured Burkholderiales bacterium isolate SRR5676450_bin.40_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424692455|tpe|CALMCA000000000.1 CA010000000

Nucleotide
MAG TPA_asm: uncultured Brevundimonas sp. isolate SRR1763383_bin.1_CONCOCT_v1.1_...
MAG TPA_asm: uncultured Brevundimonas sp. isolate SRR1763383_bin.1_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424722438|tpe|CALMFB000000000.1 FB010000000

Nucleotide

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