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Metagenome-assembled genome: SRR5676435_bin.113_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14036775; SRA: ERS11640056
Organism
uncultured bacterium
cellular organisms; Bacteria; environmental samples
Attributes
collection date2016-03-17
broad-scale environmental contextEngineered
local-scale environmental contextWastewater
environmental mediumWastewater
geographic locationHong Kong
investigation typemetagenome-assembled genome
isolation sourcewastewater metagenome
project namedesigned to identify antibiotic resistant profiles in sewage
sample nameSRR5676435_bin.113_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14036775
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:08Z
INSDC last update2023-01-03T00:32:08Z
INSDC statuspublic
Submitter IdSRR5676435_bin.113_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.12.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score65.07
completeness softwareCheckM
contamination score2.15
geographic location (latitude)22.4
geographic location (longitude)114.21
metagenomic sourcewastewater metagenome
sample derived fromSAMN07190884
scientific_nameuncultured bacterium
sequencing methodIllumina HiSeq 4000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5676435 of study SRP109028.

BioProject
PRJEB51080 Large-scale analysis of novel cellular microbes from the wastewater biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14036775
ID:
32556087

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