Metagenome-assembled genome: SRR5676451_bin.79_CON... - BioSample

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Result Filters

Organism: uncultured Bacteroidetes bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; environmental samples

Attributes

collection date	2016-03-17
broad-scale environmental context	Engineered
local-scale environmental context	Wastewater
environmental medium	Wastewater
geographic location	Hong Kong
investigation type	metagenome-assembled genome
isolation source	wastewater metagenome
project name	designed to identify antibiotic resistant profiles in sewage
sample name	SRR5676451_bin.79_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14036816
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:03Z
INSDC last update	2023-01-03T00:32:03Z
INSDC status	public
Submitter Id	SRR5676451_bin.79_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	81.53
completeness software	CheckM
contamination score	1.99
geographic location (latitude)	22.4
geographic location (longitude)	114.21
metagenomic source	wastewater metagenome
sample derived from	SAMN07190883
scientific_name	uncultured Bacteroidetes bacterium
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5676451 of study SRP109028.

BioProject: PRJEB51080 Large-scale analysis of novel cellular microbes from the wastewater biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR5676451_bin.79_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR5676451_bin.79_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured bacterium isolate SRR5676436_bin.40_CONCOCT_v1.1_MAG, wh...
MAG TPA_asm: uncultured bacterium isolate SRR5676436_bin.40_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423002528|tpe|CALMAY000000000.1 AY010000000

Nucleotide
MAG TPA_asm: uncultured Alicycliphilus sp. isolate SRR2107173_bin.71_CONCOCT_v1....
MAG TPA_asm: uncultured Alicycliphilus sp. isolate SRR2107173_bin.71_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425593287|tpe|CALMYD000000000.1 YD010000000

Nucleotide
Metagenome-assembled genome: SRR6158309_bin.25_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR6158309_bin.25_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Chitinophagaceae bacterium isolate ERR712384_bin.19_CONC...
MAG TPA_asm: uncultured Chitinophagaceae bacterium isolate ERR712384_bin.19_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424914904|tpe|CALMTV000000000.1 TV010000000

Nucleotide

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