Metagenome-assembled genome: SRR6158309_bin.25_CON... - BioSample

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Result Filters

Organism: uncultured Candidatus Saccharibacteria bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Saccharibacteria; environmental samples

Attributes

collection date	2015-12-01
broad-scale environmental context	Engineered
local-scale environmental context	Wastewater
environmental medium	Wastewater
geographic location	Italy
investigation type	metagenome-assembled genome
isolation source	wastewater metagenome
project name	We studied the resistome (and more specifically the antibiotic resistance genes) in the effluents of 3 WWTPs and in the receiving waters when mixed in different proportions
sample name	SRR6158309_bin.25_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14036860
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:07Z
INSDC last update	2023-01-03T00:32:07Z
INSDC status	public
Submitter Id	SRR6158309_bin.25_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	65.3
completeness software	CheckM
contamination score	1.17
geographic location (latitude)	45.93
geographic location (longitude)	8.56
metagenomic source	wastewater metagenome
sample derived from	SAMN07774222
scientific_name	uncultured Candidatus Saccharibacteria bacterium
sequencing method	NextSeq 500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6158309 of study SRP119748.

BioProject: PRJEB51080 Large-scale analysis of novel cellular microbes from the wastewater biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR6158309_bin.25_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR6158309_bin.25_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Chitinophagaceae bacterium isolate ERR712384_bin.19_CONC...
MAG TPA_asm: uncultured Chitinophagaceae bacterium isolate ERR712384_bin.19_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424914904|tpe|CALMTV000000000.1 TV010000000

Nucleotide
Metagenome-assembled genome: SRR2107215_bin.54_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR2107215_bin.54_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Nitrosomonas sp. isolate SRR5676453_bin.13_CONCOCT_v1.1_...
MAG TPA_asm: uncultured Nitrosomonas sp. isolate SRR5676453_bin.13_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424799575|tpe|CALMNK000000000.1 NK010000000

Nucleotide
MAG TPA_asm: uncultured Alphaproteobacteria bacterium isolate SRR2107213_bin.93_...
MAG TPA_asm: uncultured Alphaproteobacteria bacterium isolate SRR2107213_bin.93_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424652656|tpe|CALMUW000000000.1 UW010000000

Nucleotide

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