Metagenome-assembled genome: ERR4757805_bin.9_CONC... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Gluconobacter albidus
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter

Attributes

collection date	not provided
broad-scale environmental context	Engineered
local-scale environmental context	Food production
environmental medium	Food production
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	food production metagenome
project name	Cotter Lab FF study
sample name	ERR4757805_bin.9_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14037260
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:15Z
INSDC last update	2023-01-03T00:32:15Z
INSDC status	public
Submitter Id	ERR4757805_bin.9_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.14.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	84.22
completeness software	CheckM
contamination score	3.73
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	food production metagenome
sample derived from	SAMEA6167690
scientific_name	Gluconobacter albidus
sequencing method	NextSeq 500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR4757805 of study ERP118359.

BioProject: PRJEB51073 Large-scale analysis of novel cellular microbes from the food production biome
Retrieve all samples from this project

Metagenome-assembled genome: ERR4757805_bin.9_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR4757805_bin.9_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Firmicutes bacterium isolate SRR1561994_bin.63_CONCOCT_v...
MAG TPA_asm: uncultured Firmicutes bacterium isolate SRR1561994_bin.63_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424430490|tpe|CALNAO000000000.1 AO010000000

Nucleotide
Metagenome-assembled genome: ERR4757829_bin.16_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR4757829_bin.16_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Paenibacillaceae bacterium isolate SRR1561999_bin.163_CO...
MAG TPA_asm: uncultured Paenibacillaceae bacterium isolate SRR1561999_bin.163_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425113173|tpe|CALNBV000000000.1 BV010000000

Nucleotide
MAG TPA_asm: Leuconostoc mesenteroides isolate ERR4757805_bin.37_CONCOCT_v1.1_MA...
MAG TPA_asm: Leuconostoc mesenteroides isolate ERR4757805_bin.37_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423671052|tpe|CALNBL000000000.1 BL010000000

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample