Metagenome-assembled genome: ERR4757815_bin.5_CONC... - BioSample

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Result Filters

Organism: Lactococcus lactis
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus

Attributes

collection date	not provided
broad-scale environmental context	Engineered
local-scale environmental context	Food production
environmental medium	Food production
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	food production metagenome
project name	Cotter Lab FF study
sample name	ERR4757815_bin.5_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14037263
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:15Z
INSDC last update	2023-01-03T00:32:15Z
INSDC status	public
Submitter Id	ERR4757815_bin.5_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.14.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.5
completeness software	CheckM
contamination score	2.14
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	food production metagenome
sample derived from	SAMEA6167700
scientific_name	Lactococcus lactis
sequencing method	NextSeq 500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR4757815 of study ERP118359.