Metagenome-assembled genome: ERR4757829_bin.36_CON... - BioSample

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Result Filters

Organism: uncultured Burkholderiales bacterium
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Engineered
local-scale environmental context	Food production
environmental medium	Food production
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	food production metagenome
project name	Cotter Lab FF study
sample name	ERR4757829_bin.36_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14037273
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:09Z
INSDC last update	2023-01-03T00:32:09Z
INSDC status	public
Submitter Id	ERR4757829_bin.36_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.14.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	69.03
completeness software	CheckM
contamination score	3.45
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	food production metagenome
sample derived from	SAMEA6167714
scientific_name	uncultured Burkholderiales bacterium
sequencing method	NextSeq 500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR4757829 of study ERP118359.

BioProject: PRJEB51073 Large-scale analysis of novel cellular microbes from the food production biome
Retrieve all samples from this project

Metagenome-assembled genome: ERR4757829_bin.36_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR4757829_bin.36_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: Pichia kudriavzevii, whole genome shotgun sequencing project
MAG TPA_asm: Pichia kudriavzevii, whole genome shotgun sequencing project
gi|2426625375|tpe|CALMOQ000000000.1 OQ010000000

Nucleotide
Metagenome-assembled genome: SRR1561996_bin.135_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR1561996_bin.135_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: SRR1562009_bin.90_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR1562009_bin.90_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Clostridia bacterium isolate SRR1561995_bin.103_CONCOCT_...
MAG TPA_asm: uncultured Clostridia bacterium isolate SRR1561995_bin.103_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2426171937|tpe|CALLZZ000000000.1 ZZ010000000

Nucleotide

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