Metagenome-assembled genome: ERR4757843_bin.13_CON... - BioSample

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Result Filters

Organism: uncultured Lactobacillus sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Engineered
local-scale environmental context	Food production
environmental medium	Food production
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	food production metagenome
project name	Cotter Lab FF study
sample name	ERR4757843_bin.13_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14037280
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:10Z
INSDC last update	2023-01-03T00:32:10Z
INSDC status	public
Submitter Id	ERR4757843_bin.13_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.14.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.48
completeness software	CheckM
contamination score	0.13
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	food production metagenome
sample derived from	SAMEA6167728
scientific_name	uncultured Lactobacillus sp.
sequencing method	NextSeq 500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR4757843 of study ERP118359.

BioProject: PRJEB51073 Large-scale analysis of novel cellular microbes from the food production biome
Retrieve all samples from this project

Metagenome-assembled genome: ERR4757843_bin.13_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR4757843_bin.13_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: Treponema maltophilum isolate SRR1562006_bin.51_CONCOCT_v1.1_MAG, w...
MAG TPA_asm: Treponema maltophilum isolate SRR1562006_bin.51_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423567274|tpe|CALBQO000000000.1 QO010000000

Nucleotide
MAG TPA_asm: uncultured Clostridiaceae bacterium isolate SRR1561995_bin.132_CONC...
MAG TPA_asm: uncultured Clostridiaceae bacterium isolate SRR1561995_bin.132_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424670699|tpe|CALCDS000000000.1 DS010000000

Nucleotide
MAG TPA_asm: uncultured Lactobacillus sp. isolate SRR2753157_bin.69_CONCOCT_v1.1...
MAG TPA_asm: uncultured Lactobacillus sp. isolate SRR2753157_bin.69_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423292426|tpe|CALLXQ000000000.1 XQ010000000

Nucleotide
Metagenome-assembled genome: SRR1561997_bin.122_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR1561997_bin.122_CONCOCT_v1.1_MAG

biosample

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