Metagenome-assembled genome: SRR2753156_bin.73_CON... - BioSample

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Result Filters

Organism: uncultured Bifidobacterium sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples

Attributes

collection date	2014-04-01
broad-scale environmental context	Engineered
local-scale environmental context	Food production
environmental medium	Food production
geographic location	Colombia
investigation type	metagenome-assembled genome
isolation source	food production metagenome
project name	To characterize the microbial communities present in a cassava sour starch tank after 30 days of fermentation using high-throughput metagenome sequencing.
sample name	SRR2753156_bin.73_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14037534
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:15Z
INSDC last update	2023-01-03T00:32:15Z
INSDC status	public
Submitter Id	SRR2753156_bin.73_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	92.5
completeness software	CheckM
contamination score	1.74
geographic location (latitude)	3.016
geographic location (longitude)	-76.483
metagenomic source	food production metagenome
sample derived from	SAMN04096399
scientific_name	uncultured Bifidobacterium sp.
sequencing method	Illumina MiSeq
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2753156 of study SRP065087.

BioProject: PRJEB51073 Large-scale analysis of novel cellular microbes from the food production biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR2753156_bin.73_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR2753156_bin.73_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Clostridiaceae bacterium isolate SRR1562006_bin.20_CONCO...
MAG TPA_asm: uncultured Clostridiaceae bacterium isolate SRR1562006_bin.20_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425075218|tpe|CALBQN000000000.1 QN010000000

Nucleotide
Metagenome-assembled genome: SRR5438753_bin.35_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR5438753_bin.35_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Firmicutes bacterium isolate SRR1561995_bin.59_CONCOCT_v...
MAG TPA_asm: uncultured Firmicutes bacterium isolate SRR1561995_bin.59_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425068892|tpe|CALGRP000000000.1 RP010000000

Nucleotide
Metagenome-assembled genome: ERR4757810_bin.45_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR4757810_bin.45_CONCOCT_v1.1_MAG

biosample

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