Metagenome-assembled genome: SRR5438753_bin.35_CON... - BioSample

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Result Filters

Organism: Acetobacter aceti
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter subgen. Acetobacter

Attributes

collection date	2017-01-30
broad-scale environmental context	Engineered
local-scale environmental context	Food production
environmental medium	Food production
geographic location	China
investigation type	metagenome-assembled genome
isolation source	food production metagenome
project name	The theoretical basis for the industrial production of Kombucha
sample name	SRR5438753_bin.35_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14037552
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:09Z
INSDC last update	2023-01-03T00:32:09Z
INSDC status	public
Submitter Id	SRR5438753_bin.35_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.65
completeness software	CheckM
contamination score	0.5
geographic location (latitude)	45.75
geographic location (longitude)	126.62
metagenomic source	food production metagenome
sample derived from	SAMN06711160
scientific_name	Acetobacter aceti
sequencing method	HiSeq X Ten
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5438753 of study SRP103682.

BioProject: PRJEB51073 Large-scale analysis of novel cellular microbes from the food production biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR5438753_bin.35_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR5438753_bin.35_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Firmicutes bacterium isolate SRR1561995_bin.59_CONCOCT_v...
MAG TPA_asm: uncultured Firmicutes bacterium isolate SRR1561995_bin.59_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425068892|tpe|CALGRP000000000.1 RP010000000

Nucleotide
Metagenome-assembled genome: ERR4757810_bin.45_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR4757810_bin.45_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Leptolinea sp. isolate SRR1562008_bin.49_CONCOCT_v1.1_MA...
MAG TPA_asm: uncultured Leptolinea sp. isolate SRR1562008_bin.49_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424734896|tpe|CALEGC000000000.1 GC010000000

Nucleotide
MAG TPA_asm: Oenococcus oeni isolate ERR4757816_bin.24_CONCOCT_v1.1_MAG, whole g...
MAG TPA_asm: Oenococcus oeni isolate ERR4757816_bin.24_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423292260|tpe|CALEPI000000000.1 PI010000000

Nucleotide

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