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N1_Bin_Bin_102_1

Identifiers
BioSample: SAMEA14073529; SRA: ERS11676761
Organism
uncultured bacterium
cellular organisms; Bacteria; environmental samples
Attributes
collection date2018-10-15
broad-scale environmental contextmarine biome [ENVO:00000447]
local-scale environmental contextmicrobial feature [ENVO:01000007]
environmental mediumcoastal sediment [ENVO:03000034]
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourceMariane sediment
project nameMetagenomes of marine macroalgae, surrounding seawater and surrounding sediments
sample nameN1_Bin_Bin_102_1
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-01-18
ENA-LAST-UPDATE2023-01-18
External IdSAMEA14073529
INSDC center aliasMarine College, Shandong University
INSDC center namemarine college, shandong university
INSDC first public2023-01-18T00:18:47Z
INSDC last update2023-01-18T00:18:47Z
INSDC statuspublic
Submitter IdN1_Bin_Bin_102_1
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT v1.2.9
binning parametersanvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning softwareCONCOCT, MAXBIN2,METABAT2, refined with dastool and manually with anvi'o 6.2
completeness score94.44
completeness softwarecheckM v1.1.3
contamination score1.71
geographic location (latitude)37.562
geographic location (longitude)122.121
metagenomic sourcemarine metagenome
sample derived fromERS11025052
sequencing methodIllumina Nova-PE150
taxonomic identity markermulti-marker approach (GTDB-tk v1.03, GTDB v95)
Description

Sediment samples were collected by a surface sediment sampler. Following collection, samples were placed in sterile 50 ml plastic bags, frozen at -80°C.

BioProject
PRJEB50838 undefined
Retrieve all samples from this project

Submission
EBI; 2023-01-19
Accession:
SAMEA14073529
ID:
32789901

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