N2_Bin_MAXBIN__001_sub_1

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Result Filters

Organism: uncultured bacterium
cellular organisms; Bacteria; environmental samples

Attributes

collection date	2019-01-15
broad-scale environmental context	marine biome [ENVO:00000447]
local-scale environmental context	microbial feature [ENVO:01000007]
environmental medium	coastal sediment [ENVO:03000034]
geographic location	China
investigation type	metagenome-assembled genome
isolation source	Mariane sediment
project name	Metagenomes of marine macroalgae, surrounding seawater and surrounding sediments
sample name	N2_Bin_MAXBIN__001_sub_1
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-01-18
ENA-LAST-UPDATE	2023-01-18
External Id	SAMEA14073683
INSDC center alias	Marine College, Shandong University
INSDC center name	marine college, shandong university
INSDC first public	2023-01-18T00:18:50Z
INSDC last update	2023-01-18T00:18:50Z
INSDC status	public
Submitter Id	N2_Bin_MAXBIN__001_sub_1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT v1.2.9
binning parameters	anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning software	CONCOCT, MAXBIN2,METABAT2, refined with dastool and manually with anvi'o 6.2
completeness score	60.37
completeness software	checkM v1.1.3
contamination score	3.91
geographic location (latitude)	37.562
geographic location (longitude)	122.121
metagenomic source	marine metagenome
sample derived from	ERS11025053
sequencing method	Illumina Nova-PE150
taxonomic identity marker	multi-marker approach (GTDB-tk v1.03, GTDB v95)

Description: Sediment samples were collected by a surface sediment sampler. Following collection, samples were placed in sterile 50 ml plastic bags, frozen at -80°C.

N2_Bin_MAXBIN__001_sub_1
N2_Bin_MAXBIN__001_sub_1

biosample
MAG: uncultured Bacteroidales bacterium isolate R1_Bin_MAXBIN__017_sub_1, whole ...
MAG: uncultured Bacteroidales bacterium isolate R1_Bin_MAXBIN__017_sub_1, whole genome shotgun sequencing project
gi|2431328796|emb|CALFFJ000000000.1 FJ010000000

Nucleotide
S1_Bin_METABAT__134_1
S1_Bin_METABAT__134_1

biosample

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