N3_Bin_Bin_104

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Result Filters

Organism: uncultured Boseongicola sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Boseongicola; environmental samples

Attributes

collection date	2019-05-01
broad-scale environmental context	marine biome [ENVO:00000447]
local-scale environmental context	microbial feature [ENVO:01000007]
environmental medium	coastal sediment [ENVO:03000034]
geographic location	China
investigation type	metagenome-assembled genome
isolation source	Mariane sediment
project name	Metagenomes of marine macroalgae, surrounding seawater and surrounding sediments
sample name	N3_Bin_Bin_104
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-01-18
ENA-LAST-UPDATE	2023-01-18
External Id	SAMEA14073708
INSDC center alias	Marine College, Shandong University
INSDC center name	marine college, shandong university
INSDC first public	2023-01-18T00:18:52Z
INSDC last update	2023-01-18T00:18:52Z
INSDC status	public
Submitter Id	N3_Bin_Bin_104
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT v1.2.9
binning parameters	anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning software	CONCOCT, MAXBIN2,METABAT2, refined with dastool and manually with anvi'o 6.2
completeness score	95.69
completeness software	checkM v1.1.3
contamination score	1.87
geographic location (latitude)	37.562
geographic location (longitude)	122.121
metagenomic source	marine metagenome
sample derived from	ERS11025054
sequencing method	Illumina Nova-PE150
taxonomic identity marker	multi-marker approach (GTDB-tk v1.03, GTDB v95)

Description: Sediment samples were collected by a surface sediment sampler. Following collection, samples were placed in sterile 50 ml plastic bags, frozen at -80°C.

N3_Bin_Bin_104
N3_Bin_Bin_104

biosample
MAG: uncultured Gemmata sp. isolate L1_Bin_METABAT__61_1, whole genome shotgun s...
MAG: uncultured Gemmata sp. isolate L1_Bin_METABAT__61_1, whole genome shotgun sequencing project
gi|2437503538|emb|CALJJO000000000.1 JO010000000

Nucleotide
H1_Bin_Bin_3_1_1
H1_Bin_Bin_3_1_1

biosample
MAG: uncultured bacterium isolate S1_Bin_METABAT__328_1, whole genome shotgun se...
MAG: uncultured bacterium isolate S1_Bin_METABAT__328_1, whole genome shotgun sequencing project
gi|2431367423|emb|CALLJL000000000.1 JL010000000

Nucleotide
MAG: uncultured Bdellovibrionales bacterium isolate R1_Bin_METABAT__256_1, whole...
MAG: uncultured Bdellovibrionales bacterium isolate R1_Bin_METABAT__256_1, whole genome shotgun sequencing project
gi|2431282324|emb|CALGWV000000000.1 WV010000000

Nucleotide

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