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N3_Bin_Bin_31_sub_1

Identifiers
BioSample: SAMEA14073712; SRA: ERS11676944
Organism
uncultured Gammaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; environmental samples
Attributes
collection date2019-05-01
broad-scale environmental contextmarine biome [ENVO:00000447]
local-scale environmental contextmicrobial feature [ENVO:01000007]
environmental mediumcoastal sediment [ENVO:03000034]
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourceMariane sediment
project nameMetagenomes of marine macroalgae, surrounding seawater and surrounding sediments
sample nameN3_Bin_Bin_31_sub_1
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-01-18
ENA-LAST-UPDATE2023-01-18
External IdSAMEA14073712
INSDC center aliasMarine College, Shandong University
INSDC center namemarine college, shandong university
INSDC first public2023-01-18T00:18:53Z
INSDC last update2023-01-18T00:18:53Z
INSDC statuspublic
Submitter IdN3_Bin_Bin_31_sub_1
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT v1.2.9
binning parametersanvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning softwareCONCOCT, MAXBIN2,METABAT2, refined with dastool and manually with anvi'o 6.2
completeness score79.26
completeness softwarecheckM v1.1.3
contamination score5.77
geographic location (latitude)37.562
geographic location (longitude)122.121
metagenomic sourcemarine metagenome
sample derived fromERS11025054
sequencing methodIllumina Nova-PE150
taxonomic identity markermulti-marker approach (GTDB-tk v1.03, GTDB v95)
Description

Sediment samples were collected by a surface sediment sampler. Following collection, samples were placed in sterile 50 ml plastic bags, frozen at -80°C.

BioProject
PRJEB50838 undefined
Retrieve all samples from this project

Submission
EBI; 2023-01-19
Accession:
SAMEA14073712
ID:
32790084

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