N4_Bin_METABAT__41_1_1

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Result Filters

Organism: uncultured Lysobacterales bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales; environmental samples

Attributes

collection date	2019-08-01
broad-scale environmental context	marine biome [ENVO:00000447]
local-scale environmental context	microbial feature [ENVO:01000007]
environmental medium	coastal sediment [ENVO:03000034]
geographic location	China
investigation type	metagenome-assembled genome
isolation source	Mariane sediment
project name	Metagenomes of marine macroalgae, surrounding seawater and surrounding sediments
sample name	N4_Bin_METABAT__41_1_1
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-01-18
ENA-LAST-UPDATE	2023-01-18
External Id	SAMEA14073756
INSDC center alias	Marine College, Shandong University
INSDC center name	marine college, shandong university
INSDC first public	2023-01-18T00:18:47Z
INSDC last update	2023-01-18T00:18:47Z
INSDC status	public
Submitter Id	N4_Bin_METABAT__41_1_1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT v1.2.9
binning parameters	anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning software	CONCOCT, MAXBIN2,METABAT2, refined with dastool and manually with anvi'o 6.2
completeness score	77.04
completeness software	checkM v1.1.3
contamination score	4.43
geographic location (latitude)	37.562
geographic location (longitude)	122.121
metagenomic source	marine metagenome
sample derived from	ERS11025055
sequencing method	Illumina Nova-PE150
taxonomic identity marker	multi-marker approach (GTDB-tk v1.03, GTDB v95)

Description: Sediment samples were collected by a surface sediment sampler. Following collection, samples were placed in sterile 50 ml plastic bags, frozen at -80°C.

N4_Bin_METABAT__41_1_1
N4_Bin_METABAT__41_1_1

biosample
N1_Bin_METABAT__120_1
N1_Bin_METABAT__120_1

biosample
MAG: Brevundimonas diminuta isolate H2_Bin_Bin_97_1, whole genome shotgun sequen...
MAG: Brevundimonas diminuta isolate H2_Bin_Bin_97_1, whole genome shotgun sequencing project
gi|2431318331|emb|CALKXW000000000.1 XW010000000

Nucleotide
MAG: uncultured Desulfosoma sp. isolate R1_Bin_METABAT__208_1, whole genome shot...
MAG: uncultured Desulfosoma sp. isolate R1_Bin_METABAT__208_1, whole genome shotgun sequencing project
gi|2432750768|emb|CALGWH000000000.1 WH010000000

Nucleotide
MAG: uncultured Gemmataceae bacterium isolate N1_Bin_Bin_127_sub_1, whole genome...
MAG: uncultured Gemmataceae bacterium isolate N1_Bin_Bin_127_sub_1, whole genome shotgun sequencing project
gi|2432805172|emb|CAKZUU000000000.1 UU010000000

Nucleotide

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