R1_Bin_METABAT__42_1

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Candidatus Bipolaricaulota bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Bipolaricaulota; unclassified Candidatus Bipolaricaulota

Attributes

collection date	2018-10-15
broad-scale environmental context	marine biome [ENVO:00000447]
local-scale environmental context	microbial feature [ENVO:00002150]
environmental medium	Macroalgae
geographic location	China
investigation type	metagenome-assembled genome
isolation source	Mariane macroalgea Grateloupia sp.
project name	Metagenomes of marine macroalgae, surrounding seawater and surrounding sediments
sample name	R1_Bin_METABAT__42_1
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-01-18
ENA-LAST-UPDATE	2023-01-18
External Id	SAMEA14073909
INSDC center alias	Marine College, Shandong University
INSDC center name	marine college, shandong university
INSDC first public	2023-01-18T00:18:52Z
INSDC last update	2023-01-18T00:18:52Z
INSDC status	public
Submitter Id	R1_Bin_METABAT__42_1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT v1.2.9
binning parameters	anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning software	CONCOCT, MAXBIN2,METABAT2, refined with dastool and manually with anvi'o 6.2
completeness score	91.53
completeness software	checkM v1.1.3
contamination score	0
geographic location (latitude)	37.562
geographic location (longitude)	122.121
metagenomic source	marine metagenome
sample derived from	ERS10980526
sequencing method	Illumina Nova-PE150
taxonomic identity marker	multi-marker approach (GTDB-tk v1.03, GTDB v95)

Description: Macroalgea were then put in sterile seawater and remaining bacteria were removed by ultrasonication (2x 60s, 50-60 kHz). Suspensions with removed bacteria of each sample were subsequently pooled with the previously obtained washing suspensions. Per sample, nearly 60 L of washing suspension was then filtered through 0.2 µm pore size polycarbonate membrane filters (Millipore). DNA was extracted from these filters, frozen at -80°C.

R1_Bin_METABAT__42_1
R1_Bin_METABAT__42_1

biosample
MAG: uncultured Saprospiraceae bacterium isolate L3_Bin_Bin_39_1, whole genome s...
MAG: uncultured Saprospiraceae bacterium isolate L3_Bin_Bin_39_1, whole genome shotgun sequencing project
gi|2433123599|emb|CALDTJ000000000.1 TJ010000000

Nucleotide
MAG: uncultured bacterium isolate H4_Bin_MAXBIN__062_sub_1, whole genome shotgun...
MAG: uncultured bacterium isolate H4_Bin_MAXBIN__062_sub_1, whole genome shotgun sequencing project
gi|2433105071|emb|CALFWQ000000000.1 WQ010000000

Nucleotide
R2_Bin_METABAT__114_1
R2_Bin_METABAT__114_1

biosample

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample