S1_Bin_METABAT__295_1

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Result Filters

Organism: uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; environmental samples

Attributes

collection date	2018-10-15
broad-scale environmental context	marine biome [ENVO:00000447]
local-scale environmental context	microbial feature [ENVO:00002150]
environmental medium	coastal sea water [ENVO:00002150]
geographic location	China
investigation type	metagenome-assembled genome
isolation source	seawater
project name	Metagenomes of marine macroalgae, surrounding seawater and surrounding sediments
sample name	S1_Bin_METABAT__295_1
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-01-18
ENA-LAST-UPDATE	2023-01-18
External Id	SAMEA14074232
INSDC center alias	Marine College, Shandong University
INSDC center name	marine college, shandong university
INSDC first public	2023-01-18T00:18:46Z
INSDC last update	2023-01-18T00:18:46Z
INSDC status	public
Submitter Id	S1_Bin_METABAT__295_1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT v1.2.9
binning parameters	anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning software	CONCOCT, MAXBIN2,METABAT2, refined with dastool and manually with anvi'o 6.2
completeness score	85.26
completeness software	checkM v1.1.3
contamination score	1.39
geographic location (latitude)	37.562
geographic location (longitude)	122.121
metagenomic source	marine metagenome
sample derived from	ERS11025025
sequencing method	Illumina Nova-PE150
taxonomic identity marker	multi-marker approach (GTDB-tk v1.03, GTDB v95)

Description: seawater was pumped into a 500 L sterile sampling bags, brought ashore, subsequently filtered through 0.2 μm - pore-size polycarbonate filters, frozen at -80°C.

S1_Bin_METABAT__295_1
S1_Bin_METABAT__295_1

biosample
MAG: uncultured Dehalococcoidia bacterium isolate R1_Bin_Bin_23_sub_1, whole gen...
MAG: uncultured Dehalococcoidia bacterium isolate R1_Bin_Bin_23_sub_1, whole genome shotgun sequencing project
gi|2431307321|emb|CALDEZ000000000.1 EZ010000000

Nucleotide
MAG: Lentibacter algarum isolate S3_Bin_MAXBIN__083_sub_1, whole genome shotgun ...
MAG: Lentibacter algarum isolate S3_Bin_MAXBIN__083_sub_1, whole genome shotgun sequencing project
gi|2431349250|emb|CALJFH000000000.1 FH010000000

Nucleotide
H4_Bin_MAXBIN__034_1
H4_Bin_MAXBIN__034_1

biosample
MAG: uncultured Granulosicoccaceae bacterium isolate R1_Bin_Bin_128_sub_1, whole...
MAG: uncultured Granulosicoccaceae bacterium isolate R1_Bin_Bin_128_sub_1, whole genome shotgun sequencing project
gi|2432894372|emb|CALGMM000000000.1 MM010000000

Nucleotide

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