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S2_Bin_METABAT__135_1

Identifiers
BioSample: SAMEA14074318; SRA: ERS11677549
Organism
uncultured Gammaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; environmental samples
Attributes
collection date2019-01-15
broad-scale environmental contextmarine biome [ENVO:00000447]
local-scale environmental contextmicrobial feature [ENVO:00002150]
environmental mediumcoastal sea water [ENVO:00002150]
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourceseawater
project nameMetagenomes of marine macroalgae, surrounding seawater and surrounding sediments
sample nameS2_Bin_METABAT__135_1
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-01-18
ENA-LAST-UPDATE2023-01-18
External IdSAMEA14074318
INSDC center aliasMarine College, Shandong University
INSDC center namemarine college, shandong university
INSDC first public2023-01-18T00:18:53Z
INSDC last update2023-01-18T00:18:53Z
INSDC statuspublic
Submitter IdS2_Bin_METABAT__135_1
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT v1.2.9
binning parametersanvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning softwareCONCOCT, MAXBIN2,METABAT2, refined with dastool and manually with anvi'o 6.2
completeness score94.13
completeness softwarecheckM v1.1.3
contamination score1.84
geographic location (latitude)37.562
geographic location (longitude)122.121
metagenomic sourcemarine metagenome
sample derived fromERS11025026
sequencing methodIllumina Nova-PE150
taxonomic identity markermulti-marker approach (GTDB-tk v1.03, GTDB v95)
Description

seawater was pumped into a 500 L sterile sampling bags, brought ashore, subsequently filtered through 0.2 μm - pore-size polycarbonate filters, frozen at -80°C.

BioProject
PRJEB50838 undefined
Retrieve all samples from this project

Submission
EBI; 2023-01-19
Accession:
SAMEA14074318
ID:
32790689

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