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S3_Bin_Bin_173_1

Identifiers
BioSample: SAMEA14074368; SRA: ERS11677599
Organism
uncultured Verrucomicrobiales bacterium
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; environmental samples
Attributes
collection date2019-05-01
broad-scale environmental contextmarine biome [ENVO:00000447]
local-scale environmental contextmicrobial feature [ENVO:00002150]
environmental mediumcoastal sea water [ENVO:00002150]
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourceseawater
project nameMetagenomes of marine macroalgae, surrounding seawater and surrounding sediments
sample nameS3_Bin_Bin_173_1
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-01-18
ENA-LAST-UPDATE2023-01-18
External IdSAMEA14074368
INSDC center aliasMarine College, Shandong University
INSDC center namemarine college, shandong university
INSDC first public2023-01-18T00:18:49Z
INSDC last update2023-01-18T00:18:49Z
INSDC statuspublic
Submitter IdS3_Bin_Bin_173_1
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT v1.2.9
binning parametersanvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning softwareCONCOCT, MAXBIN2,METABAT2, refined with dastool and manually with anvi'o 6.2
completeness score86.85
completeness softwarecheckM v1.1.3
contamination score0.68
geographic location (latitude)37.562
geographic location (longitude)122.121
metagenomic sourcemarine metagenome
sample derived fromERS11025027
sequencing methodIllumina Nova-PE150
taxonomic identity markermulti-marker approach (GTDB-tk v1.03, GTDB v95)
Description

seawater was pumped into a 500 L sterile sampling bags, brought ashore, subsequently filtered through 0.2 μm - pore-size polycarbonate filters, frozen at -80°C.

BioProject
PRJEB50838 undefined
Retrieve all samples from this project

Submission
EBI; 2023-01-19
Accession:
SAMEA14074368
ID:
32790739

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