S3_Bin_Bin_245_sub_1

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Result Filters

Organism: uncultured Flavobacteriaceae bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; environmental samples

Attributes

collection date	2019-05-01
broad-scale environmental context	marine biome [ENVO:00000447]
local-scale environmental context	microbial feature [ENVO:00002150]
environmental medium	coastal sea water [ENVO:00002150]
geographic location	China
investigation type	metagenome-assembled genome
isolation source	seawater
project name	Metagenomes of marine macroalgae, surrounding seawater and surrounding sediments
sample name	S3_Bin_Bin_245_sub_1
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-01-18
ENA-LAST-UPDATE	2023-01-18
External Id	SAMEA14074376
INSDC center alias	Marine College, Shandong University
INSDC center name	marine college, shandong university
INSDC first public	2023-01-18T00:18:49Z
INSDC last update	2023-01-18T00:18:49Z
INSDC status	public
Submitter Id	S3_Bin_Bin_245_sub_1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT v1.2.9
binning parameters	anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning software	CONCOCT, MAXBIN2,METABAT2, refined with dastool and manually with anvi'o 6.2
completeness score	66.91
completeness software	checkM v1.1.3
contamination score	3.23
geographic location (latitude)	37.562
geographic location (longitude)	122.121
metagenomic source	marine metagenome
sample derived from	ERS11025027
sequencing method	Illumina Nova-PE150
taxonomic identity marker	multi-marker approach (GTDB-tk v1.03, GTDB v95)

Description: seawater was pumped into a 500 L sterile sampling bags, brought ashore, subsequently filtered through 0.2 μm - pore-size polycarbonate filters, frozen at -80°C.