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Metagenome-assembled genome: DRR092712_bin.5_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14074638; SRA: ERS11677868
Organism
uncultured Gammaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; environmental samples
Attributes
collection date2011-12-11
broad-scale environmental contextEnvironmental
local-scale environmental contextAquatic
environmental mediumMarine
geographic locationPacific Ocean
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameThe trench microbiome project analyzed planktonic microbiomes associated with sea surface to hadal waters along the water columns on Mariana, Ogasawara (Izu-Bonin), Japan and Chishima (Kuril) Trenches.
sample nameDRR092712_bin.5_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14074638
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:25Z
INSDC last update2023-01-03T00:32:25Z
INSDC statuspublic
Submitter IdDRR092712_bin.5_CONCOCT_v1.1_MAG
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwarespadesv3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score96.96
completeness softwareCheckM
contamination score2.54
geographic location (latitude)29.15
geographic location (longitude)142.8012
metagenomic sourcemarine metagenome
sample derived fromSAMD00080413
scientific_nameuncultured Gammaproteobacteria bacterium
sequencing methodIllumina MiSeq
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run DRR092712 of study DRP003768.

BioProject
PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14074638
ID:
32556554

BioProject Nucleotide

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