Metagenome-assembled genome: DRR093004_bin.120_CON... - BioSample

Metagenome-assembled genome: DRR093004_bin.120_CONCOCT_v1.1_MAG

Organism: uncultured Actinomycetes bacterium
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; environmental samples

Attributes

collection date	2010-06-16
broad-scale environmental context	Environmental
local-scale environmental context	Aquatic
environmental medium	Marine
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Shotgun metagenomic sequences were obtained from sub-seafloor massive sulfide deposits to reconstruct genomes of yet-uncultivated microbes.
sample name	DRR093004_bin.120_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14074649
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:27Z
INSDC last update	2023-01-03T00:32:27Z
INSDC status	public
Submitter Id	DRR093004_bin.120_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	92.08
completeness software	CheckM
contamination score	3.5
geographic location (latitude)	12.93
geographic location (longitude)	143.62
metagenomic source	marine metagenome
sample derived from	SAMD00080627
scientific_name	uncultured actinobacterium
sequencing method	Illumina MiSeq
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run DRR093004 of study DRP003947.

BioProject: PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
Retrieve all samples from this project