Metagenome-assembled genome: ERR1212038_bin.9_CONC... - BioSample

Metagenome-assembled genome: ERR1212038_bin.9_CONCOCT_v1.1_MAG

Organism: uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; environmental samples

Attributes

collection date	2015-04-15
broad-scale environmental context	Environmental
local-scale environmental context	Aquatic
environmental medium	Marine
geographic location	Mediterranean Sea
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Surface seawater samples were collected form the Blanes Bay Microbial Observatory (BBMO) in the north-western Mediterranean Sea, and they was used for metaviromics and metagenomics analyses.
sample name	ERR1212038_bin.9_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14074670
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:31Z
INSDC last update	2023-01-03T00:32:31Z
INSDC status	public
Submitter Id	ERR1212038_bin.9_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	72.18
completeness software	CheckM
contamination score	4.32
geographic location (latitude)	41.670418
geographic location (longitude)	2.8001666
metagenomic source	marine metagenome
sample derived from	SAMEA3725565
scientific_name	uncultured Alphaproteobacteria bacterium
sequencing method	Illumina MiSeq
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1212038 of study ERP013851.

BioProject: PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
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