Metagenome-assembled genome: ERR1855268_bin.23_CON... - BioSample

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Result Filters

Organism: uncultured Salinisphaerales bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Salinisphaerales; environmental samples

Attributes

collection date	2015-09-04
broad-scale environmental context	Environmental
local-scale environmental context	Aquatic
environmental medium	Marine
geographic location	Arctic Ocean
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Arctic Ocean metagenomes sampled aboard CGC Healy during the 2015 GEOTRACES Arctic research cruise
sample name	ERR1855268_bin.23_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14074675
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:33Z
INSDC last update	2023-01-03T00:32:33Z
INSDC status	public
Submitter Id	ERR1855268_bin.23_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	90.51
completeness software	CheckM
contamination score	2.11
geographic location (latitude)	88.4072
geographic location (longitude)	-176.76143
metagenomic source	marine metagenome
sample derived from	SAMEA98137168
scientific_name	uncultured Salinisphaerales bacterium
sequencing method	Illumina MiSeq
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1855268 of study ERP015773.