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Metagenome-assembled genome: ERR1855273_bin.19_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14074678; SRA: ERS11677908
Organism
uncultured Paraglaciecola sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola; environmental samples
Attributes
collection date2015-09-14
broad-scale environmental contextEnvironmental
local-scale environmental contextAquatic
environmental mediumMarine
geographic locationArctic Ocean
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameArctic Ocean metagenomes sampled aboard CGC Healy during the 2015 GEOTRACES Arctic research cruise
sample nameERR1855273_bin.19_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14074678
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:33Z
INSDC last update2023-01-03T00:32:33Z
INSDC statuspublic
Submitter IdERR1855273_bin.19_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes version 3.10.139
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score88.27
completeness softwareCheckM
contamination score3.27
geographic location (latitude)85.723
geographic location (longitude)-150.60909
metagenomic sourcemarine metagenome
sample derived fromSAMEA98148418
scientific_nameuncultured Paraglaciecola sp.
sequencing methodIllumina MiSeq
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1855273 of study ERP015773.

BioProject
PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14074678
ID:
32556594

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