U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-assembled genome: ERR2098388_bin.2_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14074686; SRA: ERS11677916
Organism
uncultured Verrucomicrobiales bacterium
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; environmental samples
Attributes
collection date2017-05-30
broad-scale environmental contextEnvironmental
local-scale environmental contextAquatic
environmental mediumMarine
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameThis study includes experiments from the following five sequencing strategies: 1) Shotgun DNA sequencing; 2) Amplicon sequencing after 18S amplification by PCR using 1391F/EukB primer set. Library were constructed according to Illumina Library protocol without any sizing; 3) Amplicon sequencing after 16S amplification by PCR using 515F/926R primer set. Library were constructed according to Illumina Library protocol without any sizing; 4) Amplicon sequencing after 16S amplification by PCR using 515F/926R primer set. Library were constructed according to Illumina Library protocol with a sizing step selecting the 450-650 bp fragments; and 5) Amplicon sequencing after 16S amplification by PCR using 515F/926R primer set. Library were constructed according to Illumina Library protocol with a sizing step selecting the 650-850 bp fragments.
sample nameERR2098388_bin.2_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14074686
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:36Z
INSDC last update2023-01-03T00:32:36Z
INSDC statuspublic
Submitter IdERR2098388_bin.2_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.11.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score93.04
completeness softwareCheckM
contamination score1.91
geographic location (latitude)42.487
geographic location (longitude)3.169
metagenomic sourcemarine metagenome
sample derived fromSAMEA104212386
scientific_nameuncultured Verrucomicrobiales bacterium
sequencing methodIllumina HiSeq 4000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2098388 of study ERP090011.

BioProject
PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14074686
ID:
32556602

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center