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Metagenome-assembled genome: ERR2206756_bin.76_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14074729; SRA: ERS11677959
Organism
uncultured Nitrospina sp.
cellular organisms; Bacteria; Nitrospinae/Tectomicrobia group; Nitrospinota; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina; environmental samples
Attributes
collection date2014-06-09
broad-scale environmental contextEnvironmental
local-scale environmental contextAquatic
environmental mediumMarine
geographic locationBaltic Sea
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameTwo out of three datasets (the first one already published with Hugerth et al 2015) included in the Baltic Sea reference metagenome assembly. The assembly include herein is a coassembly of all three datasets, complete with annotated genes to facilitate further studies of the Baltic Sea with much less computational effort. The assembly is constructed using 2.6 billion metagenomic reads from 81 water samples, spanning both spatial and temporal dimensions, and contains 6.8 million genes that have been annotated for function and taxonomy. The assembly is useful as a reference, facilitating taxonomic and functional annotation of additional samples by simply mapping their reads against the assembly.
sample nameERR2206756_bin.76_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14074729
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:25Z
INSDC last update2023-01-03T00:32:25Z
INSDC statuspublic
Submitter IdERR2206756_bin.76_CONCOCT_v1.1_MAG
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMegahit
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score97.38
completeness softwareCheckM
contamination score2.56
geographic location (latitude)57.3057
geographic location (longitude)20.0766
metagenomic sourcemarine metagenome
sample derived fromSAMEA104408597
scientific_nameuncultured Nitrospina sp.
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2206756 of study ERP104730.

BioProject
PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14074729
ID:
32556645

BioProject Nucleotide

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